SHIFT SMCE User Guide

This document serves comprehensive guide to working in the SHIFT SMCE environment.

To jump into working with SHIFT data see the quickstart guide!

• Introduction
  • Logging In
  • Shutting Down Servers and Logging Out
  • Overview of the JuypterLab Interface
• Juypter Notebook Basics
  • Kernels
• Storage Options
  • Home directory
  • EFS
  • S3 buckets
• Working With Datasets
  • SHIFT Data Quickstart Guide
  • Loading SHIFT Data with Intake
  • Xarray Basics
  • Aligning Data with Different Resolutions
  • Visualizing Data
  • Clustering Example
  • Accessing SHIFT Intake Catalog With R
  • Aligning Field and SHIFT Data
• Downloading Datasets
• Working With Other Data On SHIFT SMCE
  • EMIT Data
  • Harmonized Landsat Sentinel-2
• SHIFT SMCE Parallel Cluster
  • Getting Access
  • Connecting and Logging In
  • Storage Options
  • Managing Environments
  • Submitting Jobs
• Running Hypertrace on the SMCE
  • Getting access to the cluster
  • Installing ISOFIT
  • Running Hypertrace with sRTMnet
  • Troubleshooting
  • Running Hypertrace from Daskhub
  • Working with the Outputs
• Known Issues
  • Partial Subsetting
  • Technical Background
  • Possible Solutions
• Questions and How to Contribute
  • Questions
  • Making Contributions